I've also added a link on the Spectroscopy page. To install, download the file, remove extended file attributes with xattr -c coot-0.9.8., unpack with tar -xzf coot-0.9.8.1-macosx-x8664. A wrapper shell script called "coot" will reside in /usr/local/bin/coot when you are done.Ĭoot (Crystallographic Object-Oriented Toolkit) is for macromolecular model building, model completion and validation, particularly suitable for protein modelling using X-ray data.Ĭoot displays maps and models and allows model manipulations such as idealization, real space refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers, Ramachandran plots, skeletonization, non-crystallographic symmetry and more. There will also be a new menu titled PHENIX. Once the Coot window appears, you should see additional buttons on the toolbar for toggling communication with PHENIX and showing/hiding hydrogen atoms. The package installer will install everything in /Library/Coot. The file is usually located in the topmost directory where you installed WinCoot. The 10.6 version should run on 10.6.8 or greater. I have two versions, built on two different computers. With considerable help from Nat Echols, we can now build coot automatically every night a new revision is available. A reader sent me a link to a posting on the brilliant Crystallography on OS X website highlighting the availability of a stand alone version of Coot for Mac OSX
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